PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J314000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family RAV
Protein Properties Length: 241aa    MW: 25953.2 Da    PI: 8.9835
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J314000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.33.3e-121866155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       s+ykGV   + +grW A+I++      r +r++lg+f  +  Aa+a++ a+++++g
  Pavir.J314000.1.p 18 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFADEAAAARAYDVAALRFRG 66
                       78****9888.8*********......44**********99*************98 PP

2B375.56e-24132221183
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                        f+k  tpsdv+++++lv+pk +ae+h        + + ++ l +ed   g++W+++++++ +s++yvlt+GW++Fv+++g+ +gD+v F+
  Pavir.J314000.1.p 132 FEKSVTPSDVGRLNWLVVPKLHAEKHfppldeAADAAPPVLLAFEDvGGGKVWRFRYSFWSSSQSYVLTRGWSRFVREKGIIAGDTVAFS 221
                        89**************************9999666678999*****6666***************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-71866IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-151874IPR016177DNA-binding domain
SMARTSM003805.6E-211980IPR001471AP2/ERF domain
PROSITE profilePS5103220.5741974IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-191974IPR001471AP2/ERF domain
PRINTSPR003672.1E-62031IPR001471AP2/ERF domain
PRINTSPR003672.1E-65676IPR001471AP2/ERF domain
SuperFamilySSF1019364.71E-27127221IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-32127222IPR015300DNA-binding pseudobarrel domain
CDDcd100172.95E-22130218No hitNo description
PROSITE profilePS5086312.012132241IPR003340B3 DNA binding domain
PfamPF023627.0E-21132221IPR003340B3 DNA binding domain
SMARTSM010193.1E-16132234IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
CDEAAAASPR ARSSPSSSRY KGVVPQPNGR WGAQIYERHA RVWLGTFADE AAAARAYDVA  60
ALRFRGRGGA VNFPGPADAA EMAFLAARPK AEVVDMLRKH TYDDELRQAL RSGGAGGGGD  120
RALALVPRVP LFEKSVTPSD VGRLNWLVVP KLHAEKHFPP LDEAADAAPP VLLAFEDVGG  180
GKVWRFRYSF WSSSQSYVLT RGWSRFVREK GIIAGDTVAF SQAAAVSSSA SSADGEMDDW  240
M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-3713122313103DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.1944e-42root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440616.18e-99hypothetical protein SORBIDRAFT_09g004140
SwissprotQ9LS062e-86RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
TrEMBLC5Z0G99e-99C5Z0G9_SORBI; Putative uncharacterized protein Sb09g004140
STRINGSb09g004140.13e-98(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-66related to ABI3/VP1 2